Publications

Scientific publications featuring Jumpcode

Tetramic Acids Mutanocyclin and Reutericyclin A, Produced by Streptococcus mutans Strain B04Sm5 Modulate the Ecology of an in vitro Oral Biofilm.

Uranga, C., Nelson, K. E., Edlund, A., & Baker, J. L. Tetramic Acids Mutanocyclin and Reutericyclin A, Produced by Streptococcus mutans Strain B04Sm5 Modulate the Ecology of an in vitro Oral Biofilm. Frontiers in Oral Health 2022. https://doi.org/10.3389/froh.2021.796140 READ MORE

Application of CRISPR-based human and bacterial ribosomal RNA depletion for SARS-CoV-2 shotgun metagenomic sequencing

Ceron, S., Clemons, N. & von Bredow, B. Application of CRISPR-based human and bacterial ribosomal RNA depletion for SARS-CoV-2 shotgun metagenomics sequencing. American Journal of Clinical Pathology 2022; doi: https://doi.org/10.1093/ajcp/aqac135. READ MORE

A CRISPR/Cas9-based enhancement of high-throughput single-cell transcriptomics

Pandey A, Bezney J, DeAscanis D, Kirsch E, Ahmed F, Crinklaw A, Choudhary KS, Mandala T, Deason J, Hamdi J, Siddique A, Ranganathan S, Ordoukhanian P, Brown K, Armstrong J, Head S, Eric J. Topol. A CRISPR/Cas9-based enhancement of high-throughput single-cell transcriptomics. bioRxiv 2022. 09.06.506867; doi: https://doi.org/10.1101/2022.09.06.506867. READ MORE

A universal day zero infectious disease testing strategy leveraging CRISPR-based sample depletion and metagenomics sequencing

Chan AP, Siddique A, Desplat Y, Choi Y, Ranganathan S, Choudhary KS, Diaz J, Bezney J, DeAscanis D, George Z, Wong S, Selleck W, Bowers J, Zismann V, Reining L, Highlander S, Hakak Y, Brown K, Armstrong JR, Schork NJ. A Universal Day Zero Infectious Disease Testing Strategy doi: https://doi.org/10.1101/2022.05.12.22274799. READ MORE

STOmics-GenX: CRISPR based approach to improve cell identity specific gene detection from spatially resolved transcriptomics

Currenti, J., Qiao, L., Pai, R., Gupta, S., Costerwell, K., Wise, K., Sun, X., Armstrong, J., Crane, J., Pathak, S., Yang, B., George, J., Plummer, J., Martelotto, L., Sharma, A. STOmics-GenX: CRISPR based approach to improve cell identity specific gene detection from spatially resolved transcriptomics. bioRxiv 2022. https://doi.org/10.1101/2022.12.08.519589 READ MORE