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Publications


Scientific publications featuring Jumpcode

Tetramic Acids Mutanocyclin and Reutericyclin A, Produced by Streptococcus mutans Strain B04Sm5 Modulate the Ecology of an in vitro Oral Biofilm.
Uranga, C., Nelson, K. E., Edlund, A., & Baker, J. L. Tetramic Acids Mutanocyclin and Reutericyclin A, Produced by Streptococcus mutans Strain B04Sm5 Modulate the Ecology of an in vitro Oral Biofilm. Frontiers in Oral Health 2022. https://doi.org/10.3389/froh.2021.796140 READ MORE
Application of CRISPR-based human and bacterial ribosomal RNA depletion for SARS-CoV-2 shotgun metagenomic sequencing
Ceron, S., Clemons, N. & von Bredow, B. Application of CRISPR-based human and bacterial ribosomal RNA depletion for SARS-CoV-2 shotgun metagenomics sequencing. American Journal of Clinical Pathology 2022; doi: https://doi.org/10.1093/ajcp/aqac135. READ MORE
A CRISPR/Cas9-based enhancement of high-throughput single-cell transcriptomics
Pandey A, Bezney J, DeAscanis D, Kirsch E, Ahmed F, Crinklaw A, Choudhary KS, Mandala T, Deason J, Hamdi J, Siddique A, Ranganathan S, Ordoukhanian P, Brown K, Armstrong J, Head S, Eric J. Topol. A CRISPR/Cas9-based enhancement of high-throughput single-cell transcriptomics. bioRxiv 2022. 09.06.506867; doi: https://doi.org/10.1101/2022.09.06.506867. READ MORE
A universal day zero infectious disease testing strategy leveraging CRISPR-based sample depletion and metagenomics sequencing
Chan AP, Siddique A, Desplat Y, Choi Y, Ranganathan S, Choudhary KS, Diaz J, Bezney J, DeAscanis D, George Z, Wong S, Selleck W, Bowers J, Zismann V, Reining L, Highlander S, Hakak Y, Brown K, Armstrong JR, Schork NJ. A Universal Day Zero Infectious Disease Testing Strategy doi: https://doi.org/10.1101/2022.05.12.22274799. READ MORE
STOmics-GenX: CRISPR based approach to improve cell identity specific gene detection from spatially resolved transcriptomics
Currenti, J., Qiao, L., Pai, R., Gupta, S., Costerwell, K., Wise, K., Sun, X., Armstrong, J., Crane, J., Pathak, S., Yang, B., George, J., Plummer, J., Martelotto, L., Sharma, A. STOmics-GenX: CRISPR based approach to improve cell identity specific gene detection from spatially resolved transcriptomics. bioRxiv 2022. https://doi.org/10.1101/2022.12.08.519589 READ MORE

Posters

Improved transcript discovery in single cell RNA-Seq with CRISPRclean(Jan 2022)

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CRISPRclean powered host depletion improves pathogen detection in a shotgun RNA-sequencing based universal infectious disease assay(March 2022)

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Using CRISPR to improve single cell transcriptomic sensitivity(May 2022)

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A universal day zero infectious disease testing strategy leveraging CRISPR-based sample depletion and metagenomic sequencing(May 2022)

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Introduction to CRISPRclean®: the in vitro use of CRISPR-Cas to refine NGS applications(May 2022)

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CRISPR mediated depletion of abundant rRNA molecules from host and bacteria improve sensitivity in microbial and metagenomic RNA sequencing(May 2022)

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Sequencing the functional genome of plant species enhanced by the in-vitro use of CRISPR-CAS9 to remove repetitive elements from Lentil and Wheat genomes.(May 2022)

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