User Manuals

Single Cell

User Manual Name (click to download)DescriptionSequencing TechnologySpeciesProduct Catalog Number
Single Cell RNA Boost Kit with panelsDescribes how to remove ~50% uninformative human reads that are not used in downstream analysis and redistribute the reads to the transcriptome from 10x Chromium Next-GEM Single Cell libraries.Short readHumanKIT1018, KIT1022, KIT1024, KIT1025
Single Cell RNA Boost Kit with PacBio MAS-SeqDescribes how to use Single Cell RNA Boost to deplete the single-cell cDNA material generated from the 10x Chromium Next GEM Single Cell 3’ Kit v3.1 in order to prepare inputs for the PacBio MAS-Seq for 10x Single Cell 3′ Kit and PacBio sequencing.PacBio Sequel II/Iie
and Revio systems
HumanKIT1018, KIT1022, KIT1024, KIT1025

Bulk RNA

RNA Decision Tree

Jumpcode depletion panels can be applied to multiple use cases. Follow this decision tree to find out which RNA depletion user manual is recommended for your study.

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User Manual Name (click to download)DescriptionSequencing TechnologySpeciesProduct Catalog Number
Stranded total RNA prep with depletionDescribes how to prepare and deplete stranded RNA-Seq libraries from total RNA. Depletion removes overabundant human, mouse, rat rRNA and/or high expressing gene panels.Short readHuman, Mouse, RatKIT1014, KIT1022, KIT1024, KIT1025, KIT1027
Plus Stranded Total RNA Prep with DepletionDescribes how to prepare and deplete stranded RNA-Seq libraries from total RNA. Depletion removes overabundant human, mouse, rat, and 212 bacteria rRNA.Short readHuman, Mouse, Rat, BacteriaKIT1016
Unique Dual Index Adapter Plate for RNA Prep (Set A)This spreadsheet lists the P5 and P7 adapter sequences for use.Short readn/aKIT1014, KIT1016, KIT1017
Post-library depletion for poly A selected librariesDescribes how to remove high expressing genes from poly A selected and ribodepleted libraries to improve sequencing sensitivity and performance.Short readHumanKIT1020, KIT1022, KIT1024, KIT1025, KIT1027
Post-library rRNA and panel depletionDescribes how to remove human, mouse, rat rRNA and/or high expressing genes from RNA-Seq libraries that has not been treated with a method to remove rRNA.Short readHuman, Mouse, RatKIT1031, KIT1032, KIT1033, KIT1034
Post-library multiplex ribodepletion

Describes how to remove overabundant human, mouse, rat, or bacterial-species rRNA from prepared RNA-Seq libraries to improve sequencing sensitivity and performance at a high-throughput scale.Short readHuman, Mouse, RatKIT1026, KIT3000s

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